P. K. Krishnan Namboori

Research Associate

Centre for Excellence in Computational Engineering
and Networking

Amrita Vishwa Vidyapeetham



Research Interests

  • Computational Chemistry and Molecular Modeling
  • Biosynthesis
  • Computational Nano Technology
  • Computational Drug Designing and Delivery Systems- Pharmacoinformatics
  • Computational Material Science
  • Soft Computing
  • Molecular systems biology
  • Smart Materials and Systems

Books Published

International

  • K. I. Ramachandran, G. Deepa and Krishnan Namboori P. K., “Computational Chemistry and Molecular Modeling- Principles and Applications”, Springer- verlag GmbH, Germany: Springer International, 2008.

National

  • Deepa Gopakumar and Krishnan Namboori P. K., “Bio-informatics Structural and Sequence Analysis, Nirosa Publishers, New Delhi (To be published).

Referred Journals

International

  • K. U. Radhagayathri, Krishnan Namboori P. K., V. P. Mohandas, T. Subeesh, Deepa Gopakumar and K. I. Ramachandran, Computational Modeling and Simulation of Nano Molecular Switch for Alzheimer’s disease (a Gene Silencing technique), International Journal of Nanoscience, 2010.
  • Varun Gopal K., Premkumar, Krishnan Namboori P. K., Sabarish Narayanan B., Deepa Gopakumar, “In-Silico Modeling and Simulation of Magnetic Nanoparticles for the Biological Cell Isolation Technique”- International Journal of Nanoscience, 2010.
  • Krishnan Namboori P. K., Arun Mohan, Radhagayathri K. U., Varun Gopal, Vasavi C. S., Premkumar P, Deepa Gopakumar & Ramachandran K. I., "Effect of Non-Coding RNA on Post-Transcriptional Gene Silencing of Alzheimer Disease", Nature Precedings, 10101/npre. 2010. 4467. 1, 2010.
  • Mala S. Kumar, Dhanya Purushothaman, K. Varun Gopal, P. Premkumar,Deepa Gopakumar and P. K. Krishnan Namboori, "Insilico Analysis of PAC-1 as an Enhancer for Caspase-3 to Promote Apoptosis", International Journal of Biotechnology & Biochemistry (IJBB), Volume 6, Number 4., 2010.
  • V. Aghila, K. L. Lainu, Arun Mohan, K. U. Radhagayathri, K. Varun Gopal, P. K. Krishnan Namboori and Deepa Gopakumar, "Designing a Drug Additive Against Antibiotic Resistant Gram- positive Bacteria", International Journal of Biotechnology and Bioengineering Research, 1.1,53–61, 2010.

National

  • L. D. Dave, Cherian Mathew, Varghese Oommen and Krishnan Namboori P. K., Structural Studies of Cu(II) and Ni(II) Complexes with a Chiral Schiff Base, Indian Journal of Chemistry-V-27-Digitized, 2008.

IEEE Xplorer

  • Shwetha M., Madathil Suchitra, Vasavi.C. S., Radhagayathri K. U., Krishnan Namboori P. K., Deepa Gopakumar, Computational Modeling and Simulation of Biomolecular Motors, ACT 2009, Trivandrum, India, IEEE Xplorer and IEEE CS Digital Library 2009.
  • Premkumar P., Krishnan Namboori P. K., Sathishkumar M., K. I. Ramachandran, Deepa Gopakumar, Rajasree P. M., Quantum Mechanical Modeling and Molecular Dynamic Simulation of Ruthenium (Ru) Polypyridyl Complexes to Study Feasibility of Artificial Photosynthesis, ARTCOM-2009, Kottayam, India , IEEE Xplorer and IEEE CS Digital Library 2009.
  • Simi M. Sabu, Suchitra M. S., Radhagayathri K. U., Sathyamoorthy. S., Krishnan Namboori P. K., Deepa Gopakumar, Barrier Properties of DNA- Protein Bio- nanopores using Monte Carlo Simulation Technique, TECHSYM 2010, IIT Kharagpur, IEEE 2010.
  • Anirudh Ranganath, Ashish G., Varun Gopal K., K. Narayanan Kutty, Krishnan Namboori P. K., Deepa Gopakumar, Quantum Mechanical Characterization of Single Walled Carbon Nanotubes (SWCNT) to Evaluate Stability and Conductivity, ACE-2010, IEEE 2010.
  • Ajith G. Warrier, Baranidharan. M., Deepak O. M., Krishnan Namboori P. K., Sujan Surendran S., Sai Ram G. L., Biomolecular Motor Proteins as Targets for Cancer Treatment- a Computational Study, IEEE Tech Sym- IIT Kharagpur, IEEE 2010.
  • Harilal P., Sai Krishna. A., Varun Gopal K., Jiyesh M. M., Sankaranarayanan A., P. K. Krishnan Namboori, "Machine Learning Approaches to Determine the “Drug-Likeness” of the Proteomic Targets", CCPE- 2010.

Accepted for Publications

  • Premkumar P., Krishnan Namboori P. K., V. P. Mohandas, K. U. Radhagayathri, Deepa Gopakumar, In- Silico Characterization of Multi-Walled Carbon Nanotubes (MWCNTs) to Develop Gas Sensors -, American Institute of Physics Proceedings.
  • Krishnan Namboori P. K., Varun Gopal K., Vasavi C. S., Sabarish Narayanan B., Deepa Gopakumar, K. I. Ramachandran, Thermal Analysis of Nano Fluids using Modeling and Molecular Dynamics Simulation, American Institute of Physics Proceedings.
  • Vasavi C. S., Saptharshi, Radhika Devi R., Lakshmi Anand, Megha P. Varma, Krishnan Namboori P. K., "Homology Modeling and Protein Ligand Interaction to Identify Potential Inhibitor for E1 Protein of Chikungunya"- ICT- 2010- to be Published in LCNS- Springer.
  • Mala S. Kumar, Lainu K. L., Aghila V., Krishnan Namboori P. K., Varun Gopal K., Vrinda Harishankar, "Designing a Promotor for a Novel Target Site Identified in Caspases for Initiating Apoptosis in Cancer Cells", ICT- 2010- to be published in LCNS-Springer.
  • Akhila V., Lainu K. L., K. U. Radhagayathri, Krishnan Namboori P. K., Varun Gopal K. and Deepa Gopakumar, “Designing a Drug Additive Against Antibiotic Resistant Gram-Positive Bacteria", International Journal of Biotechnology & Biochemistry (IJBB).
  • 20. Anirudh Ranganath, Ashish G., Varun Gopal K., K. Narayanan Kutty, Krishnan Namboori P. K. and Deepa Gopakumar, "Electrical Conductivity and Thermodynamic Stability of Single Walled carbon Nanotube using First Principles", Nano Trends (NANO SCIENCE AND TECHNOLOGY CONSORTIUM)

Communicated Papers

  • Krishnan Namboori P. K., Simi. M. Sabu, Radhagayathri K. U., Rajasree P. M., K. I. Ramachandran and Deepa Gopakumar , Monte Carlo Simulation Studies to Analyze Mobility of Irons through DNA- protein Complexes (Bio- nanopores), Journal of Mathematical Biology.
  • Krishnan Namboori P. K., Ajith G. Warrier, Premkumar P., Varun Gopal K. and Deepa Gopakumar, Sequence Analysis and Computational Study of Motor Proteins as Targets for Cancer Treatment, Computational Biology and Chemistry.
  • Krishnan Namboori P. K., Vasavi. C. S., Varungopal K., Radhagayathri K. U., Ramachandran K. I. and Deepa Gopakumar, Prediction of Drug- likeness of Guanidine Derivatives based on Machine Learning Approach, Journal of Computational Biology.
  • Krishnan Namboori P. K., Sathyaa S., Vasavi C. S., Varun Gopal K., Deepa Gopakumar, Computational Analysis of Microsatellite Region of the Genes Causing 'Alzheimer's Disease , Genomics, Proteomics & Bioinformatics.
  • Krishnan Namboori P. K., Radhagayathri K. U. Varun Gopal K., Vasavi C. S., Premkumar P., Deepa Gopakumar, K. I. Ramachandran, Antimutagenic Effect of Curcumin and its Derivatives in Pre-transcriptional Gene Silencing of Azheimer’s Disease (AD), Nature, International weekly Journal of Science.
  • Krishnan Namboori P. K., Arun Mohan, Radhagayathri K. U. Varun Gopal K., Vasavi C. S., Premkumar P., Deepa Gopakumar, K. I. Ramachandran, The Effect of Noncoding RNA on Gene Silencing for Controlling Alzheimer’s Disease, Science Magazine

Conferences

International Conferences (Completed)

  • K. U. Radhagayathri, Krishnan Namboori P. K., V. P. Mohandas, T. Subeesh, Deepa Gopakumar and K. I. Ramachandran, Computational Modeling and Simulation of Nano Molecular Switch for Alzheimer’s Disease (a Gene Silencing Technique), International Conference on Advanced Nanomaterials and Nanotechnology (ICANN- 2009), IIT-Guwahati.27. K. U. Radhagayathri, Krishnan Namboori P. K., V. P. Mohandas, T. Subeesh, Deepa Gopakumar and K. I. Ramachandran, Computational Modeling and Simulation of Nano Molecular Switch for Alzheimer’s Disease (a Gene Silencing Technique), International Conference on Advanced Nanomaterials and Nanotechnology (ICANN- 2009), IIT-Guwahati.
  • Premkumar P., Krishnan Namboori P. K., V. P. Mohandas, K. U. Radhagayathri, Deepa Gopakumar, In- Silico Characterization of Multi- Walled Carbon Nanotubes (MWCNTs) to Develop Gas Sensors, International Conference on Advanced Nanomaterials and Nanotechnology (ICANN- 2009), IIT- Guwahati.
  • Krishnan Namboori P. K., Varun Gopal K., Vasavi C. S., Sabarish Narayanan B., Deepa Gopakumar, K. I. Ramachandran, Thermal Analysis of Nano Fluids Using Modeling and Molecular Dynamics Simulation, International Conference on Advanced Nanomaterials and Nanotechnology (ICANN- 2009), IIT-Guwahati.
  • Krishnan Namboori P. K., Varun Gopal K., Premkumar, Sabarish Narayanan B., Deepa Gopakumar, In- Silico Modeling and Simulation of Magnetic Nanoparticles for the Biological Cell Isolation Technique, International Conference on Advanced Nanomaterials and Nanotechnology (ICANN-2009), IIT-Guwahati.
  • Vasavi C. S., Krishnan Namboori P. K., Sriram Ramakrishnan, Sruthy Anna Cherry, Anjitha P.S, Insilico Analysis of Nano Polyamidoamine (Pamam) Dendrimers, International Conference on Nanoscience and Technology (ICONSAT 2010), IIT-Bombay
  • Varungopal K., Praveen Babu J., P. K. Krishnan Nambori, Radhagayathri K. U., Vasavi C. S., Premkumar P., In- Silico Analysis of Aquaporin, Bioinformatica Indica 2010, University of Kerala, Trivandrum.
  • K. I. Ramachandran, Deepa Gopakumar and Krishnan Namboori P. K., "Mathematical Modeling for Structure- based Computational Drug Designing" International Joint Conference on Neural Networks- 2007 Renaissance Orlando Resort, Sea World, Florida, 2007.
  • Krishnan Namboori P. K., Deepa Gopakumar and K. I. Ramachandran, ‘Computational Drug Designing Using Chemometric Techniques’ InCoB -International Conference on Bioinformatics New Delhi 2006.

International Conferences Papers (Accepted)

  • Shilpa S., Simi M. Sabu, Radhagayathri K. U., Sathyaa S., Krishnan Namboori P. K., “The Effectiveness of [18f] fddnp in ‘Single Molecule Detection’ for Alzheimer’s Disease to Monitor Cellular Activity at the Nano Level”, International Conference on Nano Materials and Nano Technology (NANO- 2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Krishnan Namboori P. K., Rajasree P. M., Divya B., Vasavi C. S., Varun Gopal K., K. U. Radhagayathri, “Gold Nano particle - Based Quantum Dot’ for Cancer Treatment- a Computational Analysis”, International Conference on Nano Materials and Nano Technology (NANO- 2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Radhika Devi R., Arun Mohan, Karthik V. S., Vasavi C. S., Krishnan Namboori P. K., “Modeling and Simulation of a Nano scale ‘Viral Proteinlinear’ (vpl) Motor based on h1n1 Influenza Virus”, International Conference on Nano Materials and Nano Technology (NANO-2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Suresh Kumar Ayyalusamy, Gurunathan Ganesan, Lainu K. L., Shrihari S., Krishnan Namboori P. K., “Bioconjugated Manganese Di- oxide Nanoparticles (mno- nps) for the Detection of Alzheimer’s Disease – a Computational Approach”, International Conference on Nano Materials and Nano Technology (NANO-2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Varun Gopal K., Bharath Parimalam, Mala S. Kumar, Vishnu Nair M., P. K. Krishnan Namboori, “Magnetic Nanoparticles Assisted Drug Delivery Across Blood Brain Barrier”, International Conference on Nano Materials and Nano Technology (NANO-2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Vrinda Harisankar, Silpa S, Nikhil S. P., Aghila V., Krishnan Namboori P. K., “Computational Interaction Analysis of Carbon Nanotubes with Biopolymers”, International Conference on Nano Materials and Nano Technology (NANO-2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Prem Kumar P. , Sathish Kumar M. , Giridharan K., Saju Joseph, Suchithra M. S., Krishnan Namboori. P. K., “Modeling of Nano ‘Cigs’ Photovoltaic Cell to Characterize the Temperature Variation on Efficiency”, International Conference on Nano Materials and Nano Technology (NANO-2010), KSR College of Technology, Tirunchengode, Namakkal, India.
  • Lakshmi Narayanan Subramanian, Bhuvanesh M., Prinu Narayanan, Premkumar P., Dhanya Purushothaman, P. K. Krishnan Namboori, “In- Silico Modeling and Simulation of Poly Para Phenylene Vinylene (ppv), Liquid Crystal Polymer (lcp)”, International Conference on Nano Materials and Nano Technology (NANO- 2010), KSR College of Technology, Tirunchengode, Namakkal, India.

    •