DETAILS:

COURSE NAME: Computational Biology – Lab
COURSE CODE: BIF490
CREDIT: 1
SEMESTER: 3
PROGRAM: MSc Bioinformatics

SYLLABUS

Basics of Matlab for life sciences,  Fick’ law and other examples from calculus, modeling of first order Differential equations based systems in life science, Neuron simulation Virtual lab based computational neuroscience, NEURON Programming, CUDA programming and simulation with techniques of Finite difference and element methods on CUDA.

TEXT BOOKS

  1. Advanced Engineering Mathematics, Erwin Kreyszig, John Wiley and Sons, 2001.
  2. Computational Cell Biology, Christopher Fall, Springer, 2000.
  3. Mathematical models in biophysics, Riznichenko Galina Yur'evna, Book Online, Biophysical society.
  4. NVIDIA CUDA C Programming Guide available at Weblink 
     

REFERENCE

  1. Calculus: for the social, managerial and life sciences – Laurence D. Hoffmann, McGraw Hill, 1980