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Elucidation of the glucose transport pathway in glucose transporter 4 via steered molecular dynamics simulations

Publication Type : Journal Article

Publisher : PLoS ONE

Source : PLoS ONE, Volume 6, Number 10 (2011)

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Keywords : adenosine triphosphate, article, binding site, cytoplasm, Glucose, glucose transport, glucose transporter 4, hydroxyl group, molecular dynamics, molecular interaction, mutational analysis, permeability, protein conformation, sugar

Campus : Kochi

School : School of Biotechnology

Center : Biotechnology

Department : biotechnology

Year : 2011

Abstract : Background: GLUT4 is a predominant insulin regulated glucose transporter expressed in major glucose disposal tissues such as adipocytes and muscles. Under the unstimulated state, GLUT4 resides within intracellular vesicles. Various stimuli such as insulin translocate this protein to the plasma membrane for glucose transport. In the absence of a crystal structure for GLUT4, very little is known about the mechanism of glucose transport by this protein. Earlier we proposed a homology model for GLUT4 and performed a conventional molecular dynamics study revealing the conformational rearrangements during glucose and ATP binding. However, this study could not explain the transport of glucose through the permeation tunnel. Methodology/Principal Findings: To elucidate the molecular mechanism of glucose transport and its energetic, a steered molecular dynamics study (SMD) was used. Glucose was pulled from the extracellular end of GLUT4 to the cytoplasm along the pathway using constant velocity pulling method. We identified several key residues within the tunnel that interact directly with either the backbone ring or the hydroxyl groups of glucose. A rotation of glucose molecule was seen near the sugar binding site facilitating the sugar recognition process at the QLS binding site. Conclusions/Significance: This study proposes a possible glucose transport pathway and aids the identification of several residues that make direct interactions with glucose during glucose transport. Mutational studies are required to further validate the observation made in this study. © 2011 Sheena et al.

Cite this Research Publication : A. Sheena, Mohan, S. S., Haridas, N. P. A., and Anilkumar, G., “Elucidation of the glucose transport pathway in glucose transporter 4 via steered molecular dynamics simulations”, PLoS ONE, vol. 6, 2011.

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