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Stroke lesion segmentation in FLAIR MRI datasets using Customised Markov Random Fields

Publication Type : Journal Article

Thematic Areas : Wireless Network and Application

Publisher : Frontiers in Neurology

Source : Frontiers in Neurology, May 2019,

Url :

Keywords : magnetic resonance imaging, ischemic stroke, image segmentation, classification, brain lesion segmentation

Campus : Amritapuri

School : School of Engineering

Center : Amrita Center for Wireless Networks and Applications (AmritaWNA)

Department : Wireless Networks and Applications (AWNA)

Year : 2019

Abstract : Robust and reliable stroke lesion segmentation is a crucial step toward employing lesion volume as an independent endpoint for randomized trials. The aim of this work was to develop and evaluate a novel method to segment sub-acute ischemic stroke lesions from fluid-attenuated inversion recovery (FLAIR) magnetic resonance imaging (MRI) datasets. After preprocessing of the datasets, a Bayesian technique based on Gabor textures extracted from the FLAIR signal intensities is utilized to generate a first estimate of the lesion segmentation. Using this initial segmentation, a customized voxel-level Markov random field model based on intensity as well as Gabor texture features is employed to refine the stroke lesion segmentation. The proposed method was developed and evaluated based on 151 multi-center datasets from three different databases using a leave-one-patient-out validation approach. The comparison of the automatically segmented stroke lesions with manual ground truth segmentation revealed an average Dice coefficient of 0.582, which is in the upper range of previously presented lesion segmentation methods using multi-modal MRI datasets. Furthermore, the results obtained by the proposed technique are superior compared to the results obtained by two methods based on convolutional neural networks and three phase level-sets, respectively, which performed best in the ISLES 2015 challenge using multi-modal imaging datasets. The results of the quantitative evaluation suggest that the proposed method leads to robust lesion segmentation results using FLAIR MRI datasets only as a follow-up sequence.

Cite this Research Publication : N. K. Subbanna, D. Rajashekhar, B. Cheng, G. Thomalla, J. Fiehler, T. Arbel, and N. D. Forkert, “Stroke lesion segmentation in FLAIR MRI datasets using Customised Markov Random Fields”, Frontiers in Neurology, May 2019,

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