Back close

Molecular Structural Studies of Complex Natural Products by LCMS and UV Spectrophotometry

Start Date: Wednesday, Jul 01,2009

School: School of Biotechnology

Co-Project Incharge:Dr. Bipin Kumar G. Nair
Funded by:Amrita Vishwa Vidyapeetham
Molecular Structural Studies of Complex Natural Products by LCMS and UV Spectrophotometry

After broad separation of tannins as lead complex from the SBT extract , flavonoid glycosides (in the supernatant) were subjected to column chromatography using SiO2 and LH-20. Partially purified fractions were put for preparative HPLC and glycosides were isolated. The amounts of individual compounds were small. The UV spectra of the isolated fractions before and after the hydrolysis show a bathochromic shift of 16 nm (in Band II) suggesting that positions 3 of flavonoids were blocked. Therefore it was inferred that the 3-hydroxyls were blocked by glycosidation or conjugation. Use of UV shift reagents (AlCl3, NaOAc, H3BO3) gave information on the positions of other hydroxyls in the molecules. LC-MS/MS gave the molecular weights of the glycosides. Acid hydrolysis of the glycosides furnished information on the aglycones and the carbohydrates. The qualitative information on the carbohydrates could be obtained by TLC/paper chromatography. A careful analysis of MS/MS data gave quantitative data on the sequence of attachment of carbohydrates and structure of the aglycone. As an illustration of this strategy, analysis of peak at m/e 771 is given below: The peak at 771 (M+ +1) on MS loses a mass of 146 to give an ion at 625 .This ion on further MS/MS show loss of another fragment of 146 to give an ion at 479. Successive loss of two 146 moieties suggest the presence of two consecutiverhamnosyl residues. Ion 479 give 317 with the loss of 162 which represents a glucosyl entity. The remaining ion 317 was identified as isorhamnetin by MS/MS. Taking consideration of the fragmentations of the peak at 771 it is concluded that it represents isorhamnetin 3-glucodirhamnoside Similarly the structures of other glycosides were derived as given in the following

ISORHAMNETIN 3-GLUCODIRHAMNOSIDE

LC-MS  FRAGMENTATION OF  ION 771

Table : 1

No.COMPOUNDSMOLECULAR WEIGHT/ FRAGMENTS
1Kaempferol -3-diglucosideMW=611, fragment 611-162-162=287.
2Isorhamnetin -3-rhamnodiglucosideMW=787, fragment 787-162-162-146=317
3Kaempferol-3- rhamnoglucosideMW=595,  fragment 595-162-146=287.
4Isorhamnetin-3- glucorhamnosideMW=595,  fragment 595-162-146=287.
5Kaempferol-3- glucorhamnosideMW=595, fragment 595-162-146=287.
6Isorhamnetin-3- rhamnoglucosideMW=625, fragment 625-146-162=317
7Quercetin-3- diglucosideMW= 627, fragment 627-162-162=303.
8Isorhamnetin-3- rhamnoglucosideMW= 641, fragment 641-162-146=317
9Quercetin-3- diglucosideMW= 627, fragment 627-162-162=303.
10Quercetin -3-diglucorhamnosideMW=773, fragment 773-162-146-162=303.

Following similar strategy, tannins were also characterized. For example one of the fractions from Sephadex LH-20 colunm, on LCMS gave an ion M++1 at 751 which lost 152 to give 599 ion indicating loss of galloyl unit. Further loss of 162 from 599 suggests the loss of glucosyl moiety to give 303 which was identified as ellagic acid by the analysis of its MS/MS fragments. Thus 751 ion represent :Ellagi-gluco- gallate. About half a dozen tannins were thus identified.

LC-MS FRAGMENTATION OF M+ ION 751

Related Projects

Synergistic Effects of Plants and Bacteriophages in Wastewater treatment
Synergistic Effects of Plants and Bacteriophages in Wastewater treatment
Modulation of fibrino(geno)lytic proteases from Russell’s viper venom using natural products and analogs
Modulation of fibrino(geno)lytic proteases from Russell’s viper venom using natural products and analogs
Mass Spectrometry Assisted Identification of Antioxidant Pigments from Stoechospermum polypodioides, a Marine Brown Macro Alga
Mass Spectrometry Assisted Identification of Antioxidant Pigments from Stoechospermum polypodioides, a Marine Brown Macro Alga
Value addition to seabukthorn through isolation & characterisation of pharmacologically active compounds
Value addition to seabukthorn through isolation & characterisation of pharmacologically active compounds
Benchtop Nanoscale patterning using soft lithography for the printing of DNA molecules
Benchtop Nanoscale patterning using soft lithography for the printing of DNA molecules
Admissions Apply Now