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Publications
Molecular Dynamics Information Improves cis-Peptide-Based Function Annotation of Proteins

Authors : Sreetama Das, Pratiti Bhadra, Suryanarayanarao Ramakumar, Debnath Pal

Publications
AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest

Authors : Pratiti Bhadra, Jielu Yan, Jinyan Li, Simon Fong, Shirley W. I. Siu

Publications
A Refined Empirical Force Field to Model Protein-SAM Interactions Based on AMBER14 and GAFF

Authors : Pratiti Bhadra, Shirley W I Siu

Publications
Deep-AmPEP30: Improve short antimicrobial peptides prediction with deep learning

Authors : Jielu Yan, Pratiti Bhadra, Ang Li, Pooja Sethiya, Longguang Qin, Hio Kuan Tai, Koon Ho Wong, Shirley W. I. Siu

Publications
A new Ca atom-based force-field for coarse-grained protein dynamics correlated
Publications
Protein dynamics and function correlation using a new knowledge based coarse grained force field

Authors : Pratiti Bhadra, Dr. Debanth Pal

Publications
Modulating the conformation of the Sec61 protein translocation pore
Publications
Molecular Modeling of Signal Peptide Recognition by Eukaryotic Sec Complexes

Authors : Sreetama Das, Pratiti Bhadra, S. Ramakumar, Debnath Pal

Publications
De novo inference of protein function from coarse-grained dynamics

Authors : Pratiti Bhadra, Debnath Pal

Publications
Pipeline for inferring protein function from dynamics using coarse-grained molecular mechanics forcefield

Authors : Pratiti Bhadra, Debnath Pal

Publications
Mycolactone enhances the Ca2+ leakage from endoplasmic reticulum by trapping Sec61 translocons in a Ca2+ permeable state
Publications
Signal Peptide Features Determining the Substrate Specificities of Targeting and Translocation Components in Human ER Protein Import

Authors : Sven Lang, Duy Nguyen, Pratiti Bhadra, Martin Jung, Volkhard Helms, Richard Zimmermann

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