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Course Detail

Course Name Machine Learning for Biological Sciences
Course Code 25BIO306
Program B.Sc. (Honours) in Microbiology and lntegrated Systems Biology
Semester 6
Credits 3
Campus Amritapuri

Syllabus

Unit 1

What is Data Mining? Motivating Challenges; The origins of data mining; Data Mining Tasks. Types of Data; Data Quality. Data Preprocessing; Measures of Similarity and Dissimilarity, Machine learning, Hypothesis, Version space, MAP, Maximum likelihood. Classification: Preliminaries; General approach to solving a classification problem; Decision tree induction; Rule-based classifier; Nearest-neighbor classifier, SVM, Artificial Neural Networks. Association Analysis: Problem Definition; Frequent Itemset generation; Rule Generation; Compact representation of frequent itemset; Alternative methods for generating frequent item-sets, Neural Networks, Cluster Analysis:

Unit 2

Overview, K-means, Agglomerative hierarchical clustering, DBSCAN, Overview of Cluster Evaluation, Further Topics in Data Mining: Multidimensional analysis and descriptive mining of complex data objects; Spatial data mining; Multimedia data mining; Text mining; Mining the WWW. Outlier analysis, data mining applications; Additional themes on Data mining; Social impact of Data mining; Trends in Data mining. Data warehouse ? Difference between Operational DBs and Data warehouses ? Multidimensional Data Model ? Data warehouse Architecture ?

Unit 3

Data warehouse Implementation ? OLAP Techniques Concepts & Disadvantages, Data Mining, Introduction Data Mining ? Knowledge Discovery from Databases (KDD) Process ? Data Processing for Data Mining ? Data Cleaning, Integration, Transformation, Reduction ? Data Mining Primitives ? Data Mining Query Language,

Objectives and Outcomes

Learning Objective: The course gives an idea of the different algorithms to be used to train and test systems, along with mining relevant biological data from a system. Course outcome:CO1: To understand the concept of machine learning. CO2: Learn the different classification and clustering algorithms CO3: Apply data mining techniques to extract information from databases

Text Books / References

Textbooks1. ?Data Mining: Concepts and Techniques (The Morgan Kaufmann Series in Data Management Systems) — by Jiawei Han, Micheline Kamber (2011);2. ?Insight into Data Mining ? Theory and Practice? by K.P. Soman, Shyam Diwakar, V.Ajay, PHI, 2006.

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